name: ucsc_bigwigaverageoverbed description: compute average score of bigwig over bed file keywords: - bigwig - bedGraph tools: - ucsc: description: Compute average score of big wig over each bed, which may have introns. homepage: None documentation: None tool_dev_url: None doi: "" licence: ['varies; see http://genome.ucsc.edu/license'] input: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - bed: type: file description: bed file pattern: "*.{bed}" - bigwig: type: file description: bigwig file pattern: "*.{bigwig,bw}" output: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - version: type: file description: File containing software version pattern: "*.{version.txt}" - tab: type: file description: tab file pattern: "*.{tab}" authors: - "@jianhong"