name: paraclu
description: Paraclu finds clusters in data attached to sequences.
keywords:
  - sort
tools:
  - paraclu:
      description: Paraclu finds clusters in data attached to sequences.
      homepage: https://gitlab.com/mcfrith/paraclu
      documentation: https://gitlab.com/mcfrith/paraclu
      tool_dev_url: https://gitlab.com/mcfrith/paraclu
      doi: ""
      licence: ['GPL v3-or-later']

input:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - bed:
      type: file
      description: BED file
      pattern: "*.bed"
  - min_cluster:
      type: integer
      description: Minimum size of cluster
      pattern: "*.bed"

output:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - versions:
      type: file
      description: File containing software versions
      pattern: "versions.yml"
  - bed:
      type: file
      description: clustered BED file
      pattern: "*.bed"

authors:
  - "@mashehu"