name: bedtools_merge description: combines overlapping or “book-ended” features in an interval file into a single feature which spans all of the combined features. keywords: - bed - merge tools: - bedtools: description: | A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types. documentation: https://bedtools.readthedocs.io/en/latest/content/tools/merge.html input: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - bed: type: file description: Input BED file pattern: "*.{bed}" output: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - bed: type: file description: Overlapped bed file with combined features pattern: "*.{bed}" - versions: type: file description: File containing software versions pattern: "versions.yml" authors: - "@Emiller88" - "@sruthipsuresh" - "@drpatelh"