name: cat_fastq description: Concatenates fastq files keywords: - fastq - concatenate tools: - cat: description: | The cat utility reads files sequentially, writing them to the standard output. documentation: https://www.gnu.org/software/coreutils/manual/html_node/cat-invocation.html input: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - reads: type: list description: | List of input FastQ files to be concatenated. output: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - reads: type: file description: Merged fastq file pattern: "*.{merged.fastq.gz}" - versions: type: file description: File containing software versions pattern: "versions.yml" authors: - "@joseespinosa" - "@drpatelh"