name: salmon_index description: Create index for salmon keywords: - index - fasta - genome - reference tools: - salmon: description: | Salmon is a tool for wicked-fast transcript quantification from RNA-seq data homepage: https://salmon.readthedocs.io/en/latest/salmon.html manual: https://salmon.readthedocs.io/en/latest/salmon.html doi: 10.1038/nmeth.4197 input: - genome_fasta: type: file description: Fasta file of the reference genome - transcriptome_fasta: type: file description: Fasta file of the reference transcriptome output: - index: type: directory description: Folder containing the star index files pattern: "salmon" - versions: type: file description: File containing software versions pattern: "versions.yml" authors: - "@kevinmenden" - "@drpatelh"