name: ucsc_bedtobigbed
description: Convert file from bed to bigBed format
keywords:
  - bed
  - bigbed
tools:
  - ucsc:
      description: Convert file from bed to bigBed format
      homepage: None
      documentation: None
      tool_dev_url: None
      doi: ""
      licence: ["varies; see http://genome.ucsc.edu/license"]

input:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - bed:
      type: file
      description: bed file
      pattern: "*.{bed}"
  - sizes:
      type: file
      description: chromosome sizes file
      pattern: "*.{sizes}"
  - autosql:
      type: file
      description: autoSql file to describe the columns of the BED file
      pattern: "*.{as}"

output:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - versions:
      type: file
      description: File containing software versions
      pattern: "versions.yml"
  - bigbed:
      type: file
      description: bigBed file
      pattern: "*.{bigBed}"

authors:
  - "@drpatelh"