- name: Run phantompeakqualtools  test workflow
  command: nextflow run ./tests/software/phantompeakqualtools/ -profile docker -entry test_phantompeakqualtools -c tests/config/nextflow.config
  tags:
    - phantompeakqualtools
  files:
    - path: output/phantompeakqualtools/test.single_end.sorted.bam.out
    - path: output/phantompeakqualtools/test.single_end.sorted.bam.pdf
    - path: output/phantompeakqualtools/test.single_end.sorted.bam.Rdata