- name: Run preseq single-end lcextrap
  command: nextflow run ./tests/software/preseq -profile docker -entry test_preseq_single_end -c tests/config/nextflow.config
  tags:
    - preseq
    - preseq_lcextrap

  files:
    - path: output/test_preseq_single_end/test.ccurve.txt
      md5sum: 76ae04c8eaf19c94e3210bb69da38498
    - path: output/test_preseq_single_end/test.command.log

- name: Run preseq paired-end lcextrap
  command: nextflow run ./tests/software/preseq -profile docker -entry test_preseq_paired_end -c tests/config/nextflow.config
  tags:
    - preseq
    - preseq_lcextrap

  files:
    - path: output/test_preseq_paired_end/test.ccurve.txt
      md5sum: 2836d2fabd2213f097fd7063db550276
    - path: output/test_preseq_paired_end/test.command.log