name: filtlong description: Filtlong filters long reads based on quality measures or short read data. keywords: - nanopore - quality control - QC - filtering - long reads - short reads tools: - filtlong: description: Filtlong is a tool for filtering long reads. It can take a set of long reads and produce a smaller, better subset. It uses both read length (longer is better) and read identity (higher is better) when choosing which reads pass the filter. homepage: https://anaconda.org/bioconda/filtlong documentation: None tool_dev_url: https://github.com/rrwick/Filtlong doi: "" licence: ['GPL v3'] input: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - shortreads: type: file description: fastq file pattern: "*.{fq,fastq,fq.gz,fastq.gz}" - longreads: type: file description: fastq file pattern: "*.{fq,fastq,fq.gz,fastq.gz}" output: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - versions: type: file description: File containing software versions pattern: "versions.yml" - reads: type: file description: Filtered (compressed) fastq file pattern: "*.fastq.gz" authors: - "@d4straub"