- name: bwa mem single-end
  command: nextflow run ./tests/software/bwa/mem -entry test_bwa_mem_single_end -c tests/config/nextflow.config
  tags:
    - bwa
    - bwa_mem
    - bwa_mem_single_end
  files:
    - path: output/bwa/test.bam
      md5sum: 52e81e5bd523d0b27fe533b21a0d80f5

- name: bwa mem paired-end
  command: nextflow run ./tests/software/bwa/mem -entry test_bwa_mem_paired_end -c tests/config/nextflow.config
  tags:
    - bwa
    - bwa_mem
    - bwa_mem_paired_end
  files:
    - path: output/bwa/test.bam
      md5sum: 86d82fdb68ed384c656cfc62a253052f