name: gffread description: Validate, filter, convert and perform various other operations on GFF files keywords: - gff - conversion - validation tools: - gffread: description: GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more. homepage: http://ccb.jhu.edu/software/stringtie/gff.shtml#gffread documentation: http://ccb.jhu.edu/software/stringtie/gff.shtml#gffread tool_dev_url: https://github.com/gpertea/gffread doi: 10.12688/f1000research.23297.1 licence: ["MIT"] input: - gff: type: file description: A reference file in either the GFF3, GFF2 or GTF format. pattern: "*.{gff, gtf}" output: - gtf: type: file description: GTF file resulting from the conversion of the GFF input file pattern: "*.{gtf}" - versions: type: file description: File containing software versions pattern: "versions.yml" authors: - "@emiller88"