- name: samtools bam2fq test_samtools_bam2fq_nosplit
  command: nextflow run ./tests/modules/samtools/bam2fq -entry test_samtools_bam2fq_nosplit -c ./tests/config/nextflow.config -c ./tests/modules/samtools/bam2fq/nextflow.config
  tags:
    - samtools/bam2fq
    - samtools
  files:
    - path: output/samtools/test_interleaved.fq.gz
      md5sum: d733e66d29a4b366bf9df8c42f845256

- name: samtools bam2fq test_samtools_bam2fq_withsplit
  command: nextflow run ./tests/modules/samtools/bam2fq -entry test_samtools_bam2fq_withsplit -c ./tests/config/nextflow.config -c ./tests/modules/samtools/bam2fq/nextflow.config
  tags:
    - samtools/bam2fq
    - samtools
  files:
    - path: output/samtools/test_1.fq.gz
      md5sum: 1c84aadcdca10e97be2b5b6ce773f5ed
    - path: output/samtools/test_2.fq.gz
      md5sum: e679ec035d3208785e704458d6b68c8c
    - path: output/samtools/test_other.fq.gz
      md5sum: 709872fc2910431b1e8b7074bfe38c67
    - path: output/samtools/test_singleton.fq.gz
      md5sum: 709872fc2910431b1e8b7074bfe38c67