- name: cellranger count test_cellranger_count
  command: nextflow run tests/modules/cellranger/count -entry test_cellranger_count -c tests/config/nextflow.config -c tests/modules/cellranger/count/nextflow.config
  tags:
    - cellranger
    - cellranger/count
  files:
    - path: output/cellranger/sample-123/outs/filtered_feature_bc_matrix.h5
    - path: output/cellranger/sample-123/outs/metrics_summary.csv
      md5sum: 707df0f101d479d93f412ca74f9c4131
    - path: output/cellranger/sample-123/outs/molecule_info.h5
      md5sum: cf03b2b3ca776a1c37aa3518e91268ba
    - path: output/cellranger/sample-123/outs/possorted_genome_bam.bam
      md5sum: 15441da9cfceea0bb48c8b66b1b860df
    - path: output/cellranger/sample-123/outs/possorted_genome_bam.bam.bai
      md5sum: 7c3d49c77016a09535aff61a027f750c
    - path: output/cellranger/sample-123/outs/raw_feature_bc_matrix
    - path: output/cellranger/sample-123/outs/raw_feature_bc_matrix.h5
      md5sum: 40c8df814eb8723b7317b234dc8222e9
    - path: output/cellranger/sample-123/outs/web_summary.html