- name: gatk4 applyvqsr test_gatk4_applyvqsr
  command: nextflow run tests/modules/gatk4/applyvqsr -entry test_gatk4_applyvqsr -c tests/config/nextflow.config -c ./tests/modules/gatk4/applyvqsr/nextflow.config
  tags:
    - gatk4/applyvqsr
    - gatk4
  files:
    - path: output/gatk4/test.vcf.gz
    - path: output/gatk4/test.vcf.gz.tbi
    - path: output/gatk4/versions.yml
      md5sum: 984c932ee9a5683b18e22a369aa5c9e7

- name: gatk4 applyvqsr test_gatk4_applyvqsr_allele_specific
  command: nextflow run tests/modules/gatk4/applyvqsr -entry test_gatk4_applyvqsr_allele_specific -c tests/config/nextflow.config -c ./tests/modules/gatk4/applyvqsr/nextflow.config
  tags:
    - gatk4/applyvqsr
    - gatk4
  files:
    - path: output/gatk4/test.vcf.gz
    - path: output/gatk4/test.vcf.gz.tbi
    - path: output/gatk4/versions.yml
      md5sum: 3b55f26c94c5f145f10ef4c5f83ec3cc