name: "meryl_count"
description: A genomic k-mer counter (and sequence utility) with nice features.
keywords:
  - k-mer
  - count
tools:
  - "meryl":
      description: "A genomic k-mer counter (and sequence utility) with nice features. "
      homepage: "https://github.com/marbl/meryl"
      documentation: "https://meryl.readthedocs.io/en/latest/quick-start.html"
      tool_dev_url: "https://github.com/marbl/meryl"
      doi: ""
      licence: "['GPL']"

input:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - reads:
      type: file
      description: |
        List of input FastQ files of size 1 and 2 for single-end and paired-end data,
        respectively.

output:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - versions:
      type: file
      description: File containing software versions
      pattern: "versions.yml"
  - meryl_db:
      type: directory
      description: A Meryl k-mer database
      pattern: "*.meryldb"

authors:
  - "@mahesh-panchal"