name: bedtools_complement description: Returns all intervals in a genome that are not covered by at least one interval in the input BED/GFF/VCF file. keywords: - bed - complement tools: - bedtools: description: | A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types. documentation: https://bedtools.readthedocs.io/en/latest/content/tools/complement.html params: - outdir: type: string description: | The pipeline's output directory. By default, the module will output files into `$params.outdir/` - publish_dir_mode: type: string description: | Value for the Nextflow `publishDir` mode parameter. Available: symlink, rellink, link, copy, copyNoFollow, move. - enable_conda: type: boolean description: | Run the module with Conda using the software specified via the `conda` directive input: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - bed: type: file description: List of bed files pattern: "*.{bed}" output: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - bed: type: file description: Edited bed file pattern: "*.{complement.bed}" - version: type: file description: File containing software version pattern: "*.{version.txt}" authors: -"@Emiller88" -"@sruthipsuresh"