- name: adapterremoval test_adapterremoval_single_end
  command: nextflow run tests/modules/adapterremoval -entry test_adapterremoval_single_end -c tests/config/nextflow.config
  tags:
    - adapterremoval
  files:
    - path: output/adapterremoval/test.discarded.fastq.gz
    - path: output/adapterremoval/test.settings
      md5sum: 2fd3d5d703b63ba33a83021fccf25f77
    - path: output/adapterremoval/test.truncated.fastq.gz
      md5sum: 62139afee94defad5b83bdd0b8475a1f
    - path: output/adapterremoval/versions.yml
      md5sum: ac5b46719719b7ee62739530b80869fc

- name: adapterremoval test_adapterremoval_paired_end
  command: nextflow run tests/modules/adapterremoval -entry test_adapterremoval_paired_end -c tests/config/nextflow.config
  tags:
    - adapterremoval
  files:
    - path: output/adapterremoval/test.discarded.fastq.gz
    - path: output/adapterremoval/test.settings
      md5sum: b8a451d3981b327f3fdb44f40ba2d6d1
    - path: output/adapterremoval/test.pair1.truncated.fastq.gz
      md5sum: 294a6277f0139bd597e57c6fa31f39c7
    - path: output/adapterremoval/test.pair2.truncated.fastq.gz
      md5sum: de7b38e2c881bced8671acb1ab452d78
    - path: output/adapterremoval/versions.yml
      md5sum: fa621c887897da5a379c719399c17db7

- name: adapterremoval test_adapterremoval_paired_end_collapse
  command: nextflow run tests/modules/adapterremoval -entry test_adapterremoval_paired_end_collapse -c tests/config/nextflow.config
  tags:
    - adapterremoval
  files:
    - path: output/adapterremoval/test.collapsed.fastq.gz
      md5sum: ff956de3532599a56c3efe5369f0953f
    - path: output/adapterremoval/test.collapsed.truncated.fastq.gz
    - path: output/adapterremoval/test.discarded.fastq.gz
    - path: output/adapterremoval/test.settings
      md5sum: 7f0b2328152226e46101a535cce718b3
    - path: output/adapterremoval/test.pair1.truncated.fastq.gz
      md5sum: 683be19bc1c83008944b6b719bfa34e1
    - path: output/adapterremoval/test.pair2.truncated.fastq.gz
      md5sum: e6548fe061f3ef86368b26da930174d0
    - path: output/adapterremoval/versions.yml
      md5sum: 78f589bb313c8da0147ca8ce77d7f3bf