name: "gatk_realignertargetcreator"
## TODO nf-core: Add a description of the module and list keywords
description: write your description here
keywords:
  - sort
tools:
  - "gatk":
      ## TODO nf-core: Add a description and other details for the software below
      description: "The full Genome Analysis Toolkit (GATK) framework, license restricted."
      homepage: "None"
      documentation: "None"
      tool_dev_url: "None"
      doi: ""
      licence: "['https://software.broadinstitute.org/gatk/download/licensing', 'https://www.broadinstitute.org/gatk/about/#licensing', 'BSD']"

## TODO nf-core: Add a description of all of the variables used as input
input:
  # Only when we have meta
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  # 
  ## TODO nf-core: Delete / customise this example input
  - bam:
      type: file
      description: BAM/CRAM/SAM file
      pattern: "*.{bam,cram,sam}"

## TODO nf-core: Add a description of all of the variables used as output
output:
  #Only when we have meta
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  # 
  - versions:
      type: file
      description: File containing software versions
      pattern: "versions.yml"
  ## TODO nf-core: Delete / customise this example output
  - bam:
      type: file
      description: Sorted BAM/CRAM/SAM file
      pattern: "*.{bam,cram,sam}"

authors:
  - "@jfy133"