name: tabix_bgziptabix description: bgzip a sorted tab-delimited genome file and then create tabix index keywords: - bgzip - compress - index - tabix - vcf tools: - tabix: description: Generic indexer for TAB-delimited genome position files. homepage: https://www.htslib.org/doc/tabix.html documentation: https://www.htslib.org/doc/tabix.1.html doi: 10.1093/bioinformatics/btq671 licence: ['MIT'] input: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - tab: type: file description: TAB-delimited genome position file pattern: "*.{bed,gff,sam,vcf}" output: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - gz: type: file description: Output compressed file pattern: "*.{gz}" - tbi: type: file description: tabix index file pattern: "*.{gz.tbi}" - versions: type: file description: File containing software versions pattern: "versions.yml" authors: - "@maxulysse"