process BISMARK_REPORT {
    tag "$meta.id"
    label 'process_low'

    conda (params.enable_conda ? "bioconda::bismark=0.23.0" : null)
    container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
        'https://depot.galaxyproject.org/singularity/bismark:0.23.0--0' :
        'quay.io/biocontainers/bismark:0.23.0--0' }"

    input:
    tuple val(meta), path(align_report), path(dedup_report), path(splitting_report), path(mbias)

    output:
    tuple val(meta), path("*report.{html,txt}"), emit: report
    path  "versions.yml"                       , emit: versions

    script:
    def args = task.ext.args ?: ''
    """
    bismark2report $args

    cat <<-END_VERSIONS > versions.yml
    "${task.process}":
        bismark: \$(echo \$(bismark -v 2>&1) | sed 's/^.*Bismark Version: v//; s/Copyright.*\$//')
    END_VERSIONS
    """
}