name: bwameth_index description: Performs indexing of c2t converted reference genome keywords: - bwameth - 3-letter genome - index - methylseq - bisulphite - fasta tools: - bwameth: description: | Fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome. homepage: https://github.com/brentp/bwa-meth documentation: https://github.com/brentp/bwa-meth arxiv: arXiv:1401.1129 licence: ['MIT'] input: - fasta: type: file description: Input genome fasta file output: - index: type: dir description: Directory containing bwameth genome index pattern: "index" - versions: type: file description: File containing software versions pattern: "versions.yml" authors: - "@phue"