process DRAGMAP_HASHTABLE { tag "$fasta" label 'process_high' conda (params.enable_conda ? "bioconda::dragmap=1.2.1" : null) container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/dragmap:1.2.1--hd4ca14e_0': 'quay.io/biocontainers/dragmap:1.2.1--hd4ca14e_0' }" input: path fasta output: path "dragmap" , emit: hashmap path "versions.yml" , emit: versions script: def args = task.ext.args ?: '' """ mkdir dragmap dragen-os \\ --build-hash-table true \\ --ht-reference $fasta \\ --output-directory dragmap \\ $args \\ --ht-num-threads $task.cpus cat <<-END_VERSIONS > versions.yml "${task.process}": dragmap: \$(echo \$(dragen-os --version 2>&1)) END_VERSIONS """ }