name: fasttree description: Produces a Newick format phylogeny from a multiple sequence alignment. Capable of bacterial genome size alignments. keywords: - phylogeny - newick tools: - fasttree: description: FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences homepage: http://www.microbesonline.org/fasttree/ documentation: http://www.microbesonline.org/fasttree/#Usage tool_dev_url: None doi: "" licence: ['GPL v2'] input: - alignment: type: file description: A FASTA format multiple sequence alignment file pattern: "*.{fasta,fas,fa,mfa}" output: - versions: type: file description: File containing software versions pattern: "versions.yml" - phylogeny: type: file description: A phylogeny in Newick format pattern: "*.{tre}" authors: - "@aunderwo"