name: homer_makeucscfile description: Create a UCSC bed graph with the HOMER suite keywords: - peaks - bed - bedGraph tools: - homer: description: | HOMER (Hypergeometric Optimization of Motif EnRichment) is a suite of tools for Motif Discovery and next-gen sequencing analysis. documentation: http://homer.ucsd.edu/homer/ doi: 10.1016/j.molcel.2010.05.004. licence: ['GPL-3.0-or-later'] input: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - tagDir: type: directory description: "The 'Tag Directory'" pattern: "tagDir" output: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - bedGraph: type: file description: The UCSC bed graph pattern: "tag_dir/*ucsc.bedGraph.gz" - versions: type: file description: File containing software versions pattern: "versions.yml" authors: - "@EMiller88"