process MULTIQC { label 'process_medium' conda (params.enable_conda ? 'bioconda::multiqc=1.11' : null) container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/multiqc:1.11--pyhdfd78af_0' : 'quay.io/biocontainers/multiqc:1.11--pyhdfd78af_0' }" input: path multiqc_files output: path "*multiqc_report.html", emit: report path "*_data" , emit: data path "*_plots" , optional:true, emit: plots path "versions.yml" , emit: versions script: def args = task.ext.args ?: '' """ multiqc -f $args . cat <<-END_VERSIONS > versions.yml "${task.process}": multiqc: \$( multiqc --version | sed -e "s/multiqc, version //g" ) END_VERSIONS """ }