process YARA_INDEX { tag "$fasta" label 'process_medium' conda (params.enable_conda ? "bioconda::yara=1.0.2" : null) container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/yara:1.0.2--2' : 'quay.io/biocontainers/yara:1.0.2--2' }" input: path fasta output: path "yara" , emit: index path "versions.yml", emit: versions script: def args = task.ext.args ?: '' """ mkdir yara yara_indexer \\ $fasta \\ -o "yara" mv *.{lf,rid,sa,txt}.* yara cp $fasta yara/yara.fasta cat <<-END_VERSIONS > versions.yml "${task.process}": yara: \$(echo \$(yara_indexer --version 2>&1) | sed 's/^.*yara_indexer version: //; s/ .*\$//') END_VERSIONS """ }