- name: gatk4 applybqsr test_gatk4_applybqsr
  command: nextflow run ./tests/modules/gatk4/applybqsr -entry test_gatk4_applybqsr -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/applybqsr/nextflow.config
  tags:
    - gatk4/applybqsr
    - gatk4
  files:
    - path: output/gatk4/test.bam
      md5sum: af56f5dd81b95070079d54670507f530

- name: gatk4 applybqsr test_gatk4_applybqsr_intervals
  command: nextflow run ./tests/modules/gatk4/applybqsr -entry test_gatk4_applybqsr_intervals -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/applybqsr/nextflow.config
  tags:
    - gatk4/applybqsr
    - gatk4
  files:
    - path: output/gatk4/test.bam
      md5sum: 0cbfa4be143e988d56ce741b5077510e

- name: gatk4 applybqsr test_gatk4_applybqsr_cram
  command: nextflow run ./tests/modules/gatk4/applybqsr -entry test_gatk4_applybqsr_cram -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/applybqsr/nextflow.config
  tags:
    - gatk4/applybqsr
    - gatk4
  files:
    - path: output/gatk4/test.bam
      md5sum: 720ef7453fc3c9def18bbe396062346c