name: "bcftools_rhocall"
## TODO nf-core: Add a description of the module and list keywords
description: write your description here
keywords:
  - sort
tools:
  - "bcftools":
      ## TODO nf-core: Add a description and other details for the software below
      description: "BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed.  Most commands accept VCF, bgzipped VCF and BCF with filetype detected automatically even when streaming from a pipe. Indexed VCF and BCF will work in all situations. Un-indexed VCF and BCF and streams will work in most, but not all situations."
      homepage: "None"
      documentation: "None"
      tool_dev_url: "None"
      doi: ""
      licence: "['GPL']"

## TODO nf-core: Add a description of all of the variables used as input
input:
  # Only when we have meta
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  # 
  ## TODO nf-core: Delete / customise this example input
  - bam:
      type: file
      description: BAM/CRAM/SAM file
      pattern: "*.{bam,cram,sam}"

## TODO nf-core: Add a description of all of the variables used as output
output:
  #Only when we have meta
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  # 
  - versions:
      type: file
      description: File containing software versions
      pattern: "versions.yml"
  ## TODO nf-core: Delete / customise this example output
  - bam:
      type: file
      description: Sorted BAM/CRAM/SAM file
      pattern: "*.{bam,cram,sam}"

authors:
  - "@ramprasadn"