name: gatk4_gatherpileupsummaries description: write your description here keywords: - sort tools: - gatk4: description: Genome Analysis Toolkit (GATK4) homepage: https://gatk.broadinstitute.org/hc/en-us documentation: https://gatk.broadinstitute.org/hc/en-us tool_dev_url: https://github.com/broadinstitute/gatk doi: "10.1158/1538-7445.AM2017-3590" licence: ["BSD-3-clause"] input: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - pileup: type: (list of) file(s) description: Pileup files from gatk4/getpileupsummaries pattern: "*.pileups.table" output: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - table: type: file description: pileup summaries table file pattern: "*.pileupsummaries.table" - versions: type: file description: File containing software versions pattern: "versions.yml" authors: - "@FriederikeHanssen" - "@maxulysse"