name: dshbio_exportsegments description: Export assembly segment sequences in GFA 1.0 format to FASTA format keywords: - gfa - assembly - segment tools: - dshbio: description: | Reads, features, variants, assemblies, alignments, genomic range trees, pangenome graphs, and a bunch of random command line tools for bioinformatics. LGPL version 3 or later. homepage: https://github.com/heuermh/dishevelled-bio documentation: https://github.com/heuermh/dishevelled-bio licence: ['LGPL-3.0-or-later'] input: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - gfa: type: file description: Assembly segments in uncompressed or compressed GFA 1.0 format pattern: "*.{gfa|gfa.bgz|gfa.gz|gfa.zst}" output: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - fasta: type: file description: Assembly segment sequences in gzipped FASTA format pattern: "*.{fa.gz}" - versions: type: file description: File containing software versions pattern: "versions.yml" authors: - "@heuermh"