- name: Run qualimap bamqc test workflow
  command: nextflow run ./tests/software/qualimap/bamqc -entry test_qualimap_bamqc -c tests/config/nextflow.config
  tags:
    - qualimap
    - qualimap/bamqc
  files:
    - path: ./output/qualimap/test/qualimapReport.html
    - path: ./output/qualimap/test/genome_results.txt
      md5sum: 00ad697dbec5141428ac8d850c13e1c5
    - path: ./output/qualimap/test/css/plus.png
      md5sum: 0125e6faa04e2cf0141a2d599d3bb220
    - path: ./output/qualimap/test/css/down-pressed.png
      md5sum: ebe8979581eda700fb234a73c661a4b9
    - path: ./output/qualimap/test/css/underscore.js
      md5sum: db5ba047a66617d4cd3e8c5099cc51db
    - path: ./output/qualimap/test/css/ajax-loader.gif
      md5sum: ae6667053ad118020b8e68ccf307b519
    - path: ./output/qualimap/test/css/searchtools.js
      md5sum: d550841adeedc8ed47c40ee607620937
    - path: ./output/qualimap/test/css/up.png
    - path: ./output/qualimap/test/css/file.png
    - path: ./output/qualimap/test/css/up-pressed.png
    - path: ./output/qualimap/test/css/down.png
    - path: ./output/qualimap/test/css/minus.png
    - path: ./output/qualimap/test/css/bgtop.png
    - path: ./output/qualimap/test/css/comment.png
    - path: ./output/qualimap/test/css/basic.css
      md5sum: 25b2823342c0604924a2870eeb4e7e94
    - path: ./output/qualimap/test/css/report.css
      md5sum: 7a5f09eaf7c176f966f4e8854168b812
    - path: ./output/qualimap/test/css/pygments.css
      md5sum: d625a0adb949f181bd0d3f1432b0fa7f
    - path: ./output/qualimap/test/css/comment-close.png
    - path: ./output/qualimap/test/css/doctools.js
      md5sum: 5ff571aa60e63f69c1890283e240ff8d
    - path: ./output/qualimap/test/css/comment-bright.png
    - path: ./output/qualimap/test/css/qualimap_logo_small.png
    - path: ./output/qualimap/test/css/websupport.js
      md5sum: 9e61e1e8a7433c56bd7e5a615affcf85
    - path: ./output/qualimap/test/css/agogo.css
      md5sum: bd757b1a7ce6fdc0288ba148680f4583
    - path: ./output/qualimap/test/css/bgfooter.png
    - path: ./output/qualimap/test/css/jquery.js
      md5sum: 10092eee563dec2dca82b77d2cf5a1ae
    - path: ./output/qualimap/test/raw_data_qualimapReport/insert_size_histogram.txt
      md5sum: 749630484c5b24b4973ad613d85a2341
    - path: ./output/qualimap/test/raw_data_qualimapReport/mapped_reads_nucleotide_content.txt
      md5sum: dbcb28c1ab2f0c78f6e803a24a2a695f
    - path: ./output/qualimap/test/raw_data_qualimapReport/genome_fraction_coverage.txt
      md5sum: d5ba8feb5418091d6e00e4ad0c865cf1
    - path: ./output/qualimap/test/raw_data_qualimapReport/mapping_quality_histogram.txt
      md5sum: 8b638330338758c156200a37602c53d5
    - path: ./output/qualimap/test/raw_data_qualimapReport/insert_size_across_reference.txt
      md5sum: dc553f58b5e361b9e5c894f118347bc1
    - path: ./output/qualimap/test/raw_data_qualimapReport/coverage_histogram.txt
      md5sum: f57a631c72f2373ca4d3f6c8deb1ad6d
    - path: ./output/qualimap/test/raw_data_qualimapReport/mapping_quality_across_reference.txt
      md5sum: 42223637499a2221cf99b4dd08badb6f
    - path: ./output/qualimap/test/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
      md5sum: c7c7db9fa3febd58b27e95cff857df90
    - path: ./output/qualimap/test/raw_data_qualimapReport/homopolymer_indels.txt
      md5sum: ba7484d97ab505ab8642d73074afef04
    - path: ./output/qualimap/test/raw_data_qualimapReport/duplication_rate_histogram.txt
      md5sum: 7875c892eb75a6da5115b10e3b2b767e
    - path: ./output/qualimap/test/raw_data_qualimapReport/coverage_across_reference.txt
      md5sum: fbabd3fea386712fa453e7c9825107af
    - path: ./output/qualimap/test/raw_data_qualimapReport/mapped_reads_clipping_profile.txt
      md5sum: e199f6930d4bda5f9e871cb5c628a69a
    - path: ./output/qualimap/test/images_qualimapReport/genome_reads_content_per_read_position.png
    - path: ./output/qualimap/test/images_qualimapReport/genome_gc_content_per_window.png
    - path: ./output/qualimap/test/images_qualimapReport/genome_coverage_0to50_histogram.png
    - path: ./output/qualimap/test/images_qualimapReport/genome_uniq_read_starts_histogram.png
    - path: ./output/qualimap/test/images_qualimapReport/genome_mapping_quality_across_reference.png
    - path: ./output/qualimap/test/images_qualimapReport/genome_coverage_histogram.png
    - path: ./output/qualimap/test/images_qualimapReport/genome_coverage_across_reference.png
    - path: ./output/qualimap/test/images_qualimapReport/genome_homopolymer_indels.png
    - path: ./output/qualimap/test/images_qualimapReport/genome_insert_size_histogram.png
    - path: ./output/qualimap/test/images_qualimapReport/genome_mapping_quality_histogram.png
    - path: ./output/qualimap/test/images_qualimapReport/genome_insert_size_across_reference.png
    - path: ./output/qualimap/test/images_qualimapReport/genome_reads_clipping_profile.png
    - path: ./output/qualimap/test/images_qualimapReport/genome_coverage_quotes.png