name: samtools_faidx description: Index FASTA file keywords: - index - fasta tools: - samtools: description: | SAMtools is a set of utilities for interacting with and post-processing short DNA sequence read alignments in the SAM, BAM and CRAM formats, written by Heng Li. These files are generated as output by short read aligners like BWA. homepage: http://www.htslib.org/ documentation: http://www.htslib.org/doc/samtools.html doi: 10.1093/bioinformatics/btp352 input: - fasta: type: file description: FASTA file pattern: "*.{fa,fasta}" output: - fai: type: file description: FASTA index file pattern: "*.{fai}" - version: type: file description: File containing software version pattern: "versions.yml" authors: - "@drpatelh" - "@ewels" - "@phue"