name: maxquant_lfq
## TODO nf-core: Add a description of the module and list keywords
description: write your description here
keywords:
  - sort
tools:
  - maxquant:
      ## TODO nf-core: Add a description and other details for the software below
      description: MaxQuant is a quantitative proteomics software package designed for analyzing large mass-spectrometric data sets. License restricted.
      homepage: None
      documentation: None
      tool_dev_url: None
      doi: ""
      licence: ['http://www.coxdocs.org/lib/exe/fetch.php?media=license_agreement.pdf']

## TODO nf-core: Add a description of all of the variables used as input
input:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  ## TODO nf-core: Delete / customise this example input
  - parfile:
      type: file
      description: MaxQuant parameter file (XML)
      pattern: "*.{xml}"

## TODO nf-core: Add a description of all of the variables used as output
output:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - version:
      type: file
      description: File containing software version
      pattern: "*.{version.txt}"
  ## TODO nf-core: Delete / customise this example output
  - maxquant_txt:
      type: file
      description: tables with peptides and protein information
      pattern: "*.{txt}"

authors:
  - "@veitveit"