- name: abacas
  command: nextflow run ./tests/modules/abacas -entry test_abacas -c ./tests/config/nextflow.config -c ./tests/modules/abacas/nextflow.config
  tags:
    - abacas
  files:
    - path: output/abacas/test.abacas.bin
    - path: output/abacas/test.abacas.crunch
      md5sum: 9a95358a9bd8ee97d1f2253d95623a17
    - path: output/abacas/test.abacas.fasta
      md5sum: 5e6c403d3850d52f6bde956fa2403b13
    - path: output/abacas/test.abacas.gaps
      md5sum: 5361af445b8d18a85c3af6527a97c89a
    - path: output/abacas/test.abacas.gaps.tab
      md5sum: 193024ec9e5a553573519b218eb06e29
    - path: output/abacas/test.abacas.nucmer.delta
    - path: output/abacas/test.abacas.nucmer.filtered.delta
    - path: output/abacas/test.abacas.nucmer.tiling
      md5sum: 0adaa0ce800d92c149a523d447148d95
    - path: output/abacas/test.abacas.tab
      md5sum: a5b9b452516f519a4201ff809655ef69
    - path: output/abacas/test.abacas.unused.contigs.out
      md5sum: d41d8cd98f00b204e9800998ecf8427e
    - path: output/abacas/test.abacas.MULTIFASTA.fa
      md5sum: 46c899ad70dcef8d14b5829fd8fbab82