name: imputeme_vcftoprs
description: inputs a VCF-file with whole genome DNA sequencing. Outputs a JSON with polygenic risk scores.
keywords:
  - PRS, VCF
tools:
  - imputeme:
      description:
      homepage: www.impute.me
      documentation: https://hub.docker.com/repository/docker/lassefolkersen/impute-me
      tool_dev_url: https://github.com/lassefolkersen/impute-me
      doi: "https://doi.org/10.3389/fgene.2020.00578"
      licence: LGPL3

input:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ vcf:'test', single_end:false ]
  - vcf:
      type: file
      description: vcf file
      pattern: "*.{vcf}"

output:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - versions:
      type: file
      description: File containing software versions
      pattern: "versions.yml"
  - json:
      type: file
      description: json containing Z-scores for all calculated PRS
      pattern: "*.{json}"

authors:
  - "@lassefolkersen"