- name: gatk4 applybqsr test_gatk4_applybqsr
  command: nextflow run tests/modules/gatk4/applybqsr -entry test_gatk4_applybqsr -c tests/config/nextflow.config
  tags:
    - gatk4
    - gatk4/applybqsr
  files:
    - path: output/gatk4/test.bam
      md5sum: dac716c394db5e83c12b44355c098ca7

- name: gatk4 applybqsr test_gatk4_applybqsr_intervals
  command: nextflow run tests/modules/gatk4/applybqsr -entry test_gatk4_applybqsr_intervals -c tests/config/nextflow.config
  tags:
    - gatk4
    - gatk4/applybqsr
  files:
    - path: output/gatk4/test.bam
      md5sum: 400441dbe5344658580ba0a24ba57069