name: diamond_blastx
description: Queries a DIAMOND database using blastx mode
keywords:
  - fasta
  - diamond
  - blastx
  - DNA sequence
tools:
  - diamond:
      description: Accelerated BLAST compatible local sequence aligner
      homepage: https://github.com/bbuchfink/diamond
      documentation: https://github.com/bbuchfink/diamond/wiki
      tool_dev_url: https://github.com/bbuchfink/diamond
      doi: "doi:10.1038/s41592-021-01101-x"
      licence: ['GPL v3.0']

input:
    - meta:
        type: map
        description: |
            Groovy Map containing sample information
            e.g. [ id:'test', single_end:false ]
    - fasta:
        type: file
        description: Input fasta file containing query sequences
        pattern: "*.{fa,fasta}"
    - db:
        type: directory
        description: Directory containing the nucelotide blast database
        pattern: "*"

output:
    - txt:
        type: file
        description: File containing blastx hits
        pattern: "*.{blastx.txt}"
    - version:
        type: file
        description: File containing software version
        pattern: "*.{version.txt}"

authors:
  - "@spficklin"