name: homer_findpeaks description: Find peaks with HOMER suite keywords: - annotations - peaks tools: - homer: description: | HOMER (Hypergeometric Optimization of Motif EnRichment) is a suite of tools for Motif Discovery and next-gen sequencing analysis. documentation: http://homer.ucsd.edu/homer/ doi: 10.1016/j.molcel.2010.05.004. input: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - tagDir: type: directory description: "The 'Tag Directory'" pattern: "tagDir" output: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - peaks: type: file description: The found peaks pattern: "*peaks.txt" - version: type: file description: File containing software version pattern: "*.{version.txt}" authors: - "@EMiller88"