from pathlib import Path import pytest import yaml import re def _get_workflow_names(): """Get all names of all workflows which have a test.yml in the tests directory. To do so, recursively finds all test.yml files and parses their content. """ here = Path(__file__).parent.resolve() pytest_workflow_files = here.glob("**/test.yml") for f in pytest_workflow_files: test_config = yaml.safe_load(f.read_text()) for workflow in test_config: yield workflow["name"] @pytest.mark.workflow(*_get_workflow_names()) def test_ensure_valid_version_yml(workflow_dir): workflow_dir = Path(workflow_dir) software_name = workflow_dir.name.split("_")[0].lower() versions_yml = (workflow_dir / f"output/{software_name}/versions.yml").read_text() assert ( "END_VERSIONS" not in versions_yml ), "END_VERSIONS detected in versions.yml. This is a sign of an ill-formatted HEREDOC" # Raises an exception if yaml is not valid versions = yaml.safe_load(versions_yml) assert len(versions) == 1, "The top-level of versions.yml must contain exactely one entry: the process name as dict key" software_versions = next(iter(versions.values())) assert len(software_versions), "There must be at least one version emitted." for tool, version in software_versions.items(): assert re.match( r"^\d+.*", str(version) ), f"Version number for {tool} must start with a number. "