name: rseqc_inferexperiment description: Infer strandedness from sequencing reads keywords: - rnaseq - experiment tools: - rseqc: description: | RSeQC package provides a number of useful modules that can comprehensively evaluate high throughput sequence data especially RNA-seq data. homepage: http://rseqc.sourceforge.net/ documentation: http://rseqc.sourceforge.net/ doi: 10.1093/bioinformatics/bts356 input: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - bam: type: file description: the bam file to calculate statistics of pattern: "*.{bam}" - bed: type: file description: a bed file for the reference gene model pattern: "*.{bed}" output: - txt: type: file description: infer_experiment results report pattern: "*.infer_experiment.txt" - version: type: file description: File containing software version pattern: "*.{version.txt}" authors: - "@drpatelh" - "@kevinmenden"