- name: deeptools bamcoverage test_deeptools_bamcoverage_bam
  command: nextflow run ./tests/modules/deeptools/bamcoverage -entry test_deeptools_bamcoverage_bam -c ./tests/config/nextflow.config  -c ./tests/modules/deeptools/bamcoverage/nextflow.config
  tags:
    - deeptools/bamcoverage
    - deeptools
  files:
    - path: output/deeptools/test.bigWig
      md5sum: 95fe9383a9e6c02aea6b785cf074274f

- name: deeptools bamcoverage test_deeptools_bamcoverage_cram
  command: nextflow run ./tests/modules/deeptools/bamcoverage -entry test_deeptools_bamcoverage_cram -c ./tests/config/nextflow.config  -c ./tests/modules/deeptools/bamcoverage/nextflow.config
  tags:
    - deeptools/bamcoverage
    - deeptools
  files:
    - path: output/deeptools/test.bigWig
      md5sum: 95fe9383a9e6c02aea6b785cf074274f

- name: deeptools bamcoverage test_deeptools_bamcoverage_cram_no_fasta_fai
  command: nextflow run ./tests/modules/deeptools/bamcoverage -entry test_deeptools_bamcoverage_cram_no_fasta_fai -c ./tests/config/nextflow.config  -c ./tests/modules/deeptools/bamcoverage/nextflow.config
  tags:
    - deeptools/bamcoverage
    - deeptools
  files:
    - path: output/deeptools/test.bigWig
      md5sum: 95fe9383a9e6c02aea6b785cf074274f