## TODO nf-core: Please run the following command to build this file:
#                nf-core modules create-test-yml bakta
- name: bakta
  command: nextflow run ./tests/modules/bakta -entry test_bakta -c tests/config/nextflow.config -stub-run
  tags:
    - bakta
  files:
    - path: output/bakta/test.embl
      md5sum: d41d8cd98f00b204e9800998ecf8427e
    - path: output/bakta/test.faa
      md5sum: d41d8cd98f00b204e9800998ecf8427e
    - path: output/bakta/test.ffn
      md5sum: d41d8cd98f00b204e9800998ecf8427e
    - path: output/bakta/test.fna
      md5sum: d41d8cd98f00b204e9800998ecf8427e
    - path: output/bakta/test.gbff
      md5sum: d41d8cd98f00b204e9800998ecf8427e
    - path: output/bakta/test.gff3
      md5sum: d41d8cd98f00b204e9800998ecf8427e
    - path: output/bakta/test.hypotheticals.tsv
      md5sum: d41d8cd98f00b204e9800998ecf8427e
    - path: output/bakta/test.hypotheticals.faa
      md5sum: d41d8cd98f00b204e9800998ecf8427e
    - path: output/bakta/test.tsv
      md5sum: d41d8cd98f00b204e9800998ecf8427e