- name: bowtie2 align test_bowtie2_align_single_end
  command: nextflow run tests/modules/bowtie2/align -entry test_bowtie2_align_single_end -c tests/config/nextflow.config
  tags:
    - bowtie2/align
    - bowtie2
  files:
    - path: output/bowtie2/test.bam
    - path: output/bowtie2/test.bowtie2.log
      md5sum: 7b8a9e61b7646da1089b041333c41a87
    - path: output/bowtie2/versions.yml

- name: bowtie2 align test_bowtie2_align_paired_end
  command: nextflow run tests/modules/bowtie2/align -entry test_bowtie2_align_paired_end -c tests/config/nextflow.config
  tags:
    - bowtie2/align
    - bowtie2
  files:
    - path: output/bowtie2/test.bam
    - path: output/bowtie2/test.bowtie2.log
      md5sum: bd89ce1b28c93bf822bae391ffcedd19
    - path: output/bowtie2/versions.yml