- name: rtgtools vcfeval test_rtgtools_vcfeval
  command: nextflow run tests/modules/rtgtools/vcfeval -entry test_rtgtools_vcfeval -c tests/config/nextflow.config
  tags:
    - rtgtools
    - rtgtools/vcfeval
  files:
    - path: output/rtgtools/test_results/done
    - path: output/rtgtools/test_results/fn.vcf.gz
      md5sum: be9c9106055bfad4c5985bc0d33efd56
    - path: output/rtgtools/test_results/fn.vcf.gz.tbi
      md5sum: 092a7a3162e7cff25d273525751eb284
    - path: output/rtgtools/test_results/fp.vcf.gz
      md5sum: e0f0ff841dc63e9fb61fd3a5db137ced
    - path: output/rtgtools/test_results/fp.vcf.gz.tbi
      md5sum: 092a7a3162e7cff25d273525751eb284
    - path: output/rtgtools/test_results/non_snp_roc.tsv.gz
      md5sum: ad5bad32c48f05aef232e2c0e708877a
    - path: output/rtgtools/test_results/phasing.txt
      md5sum: 133677dbd8be657439ea2b03fdfb8795
    - path: output/rtgtools/test_results/progress
    - path: output/rtgtools/test_results/snp_roc.tsv.gz
      md5sum: 6785b83d66486e7e6c75c5a5b1574c09
    - path: output/rtgtools/test_results/summary.txt
      md5sum: f4c8df93c8bdab603036bbc27b4a28c3
    - path: output/rtgtools/test_results/tp-baseline.vcf.gz
      md5sum: be9c9106055bfad4c5985bc0d33efd56
    - path: output/rtgtools/test_results/tp-baseline.vcf.gz.tbi
      md5sum: 092a7a3162e7cff25d273525751eb284
    - path: output/rtgtools/test_results/tp.vcf.gz
      md5sum: e0f0ff841dc63e9fb61fd3a5db137ced
    - path: output/rtgtools/test_results/tp.vcf.gz.tbi
      md5sum: 092a7a3162e7cff25d273525751eb284
    - path: output/rtgtools/test_results/vcfeval.log
    - path: output/rtgtools/test_results/weighted_roc.tsv.gz
      md5sum: fa7c046ea0084172f1ef91f19de07b2b
    - path: output/rtgtools/versions.yml
      md5sum: 270ed7a5a8e347b251eb4aa2198f98e8

- name: rtgtools vcfeval test_rtgtools_vcfeval_no_optional_inputs
  command: nextflow run tests/modules/rtgtools/vcfeval -entry test_rtgtools_vcfeval_no_optional_inputs -c tests/config/nextflow.config
  tags:
    - rtgtools
    - rtgtools/vcfeval
  files:
    - path: output/rtgtools/test_results/done
    - path: output/rtgtools/test_results/fn.vcf.gz
      md5sum: c11c889a4f42c8ea325748bd768ea34d
    - path: output/rtgtools/test_results/fn.vcf.gz.tbi
      md5sum: 092a7a3162e7cff25d273525751eb284
    - path: output/rtgtools/test_results/fp.vcf.gz
      md5sum: 138e85c1cd79f8fea9a33e81ce0c734c
    - path: output/rtgtools/test_results/fp.vcf.gz.tbi
      md5sum: 092a7a3162e7cff25d273525751eb284
    - path: output/rtgtools/test_results/non_snp_roc.tsv.gz
      md5sum: 34fb78a008dfc0bef02807b8a7012b07
    - path: output/rtgtools/test_results/phasing.txt
      md5sum: 133677dbd8be657439ea2b03fdfb8795
    - path: output/rtgtools/test_results/progress
    - path: output/rtgtools/test_results/snp_roc.tsv.gz
      md5sum: a4c5761c2653e2d04fc84c1cea13b1f0
    - path: output/rtgtools/test_results/summary.txt
      md5sum: f33feb32f84958fb931063044fba369b
    - path: output/rtgtools/test_results/tp-baseline.vcf.gz
      md5sum: d1c2d990899edf127ea5fcca8866fcb0
    - path: output/rtgtools/test_results/tp-baseline.vcf.gz.tbi
      md5sum: 3307008fea47adb75c46d395c5567bc0
    - path: output/rtgtools/test_results/tp.vcf.gz
      md5sum: e35b4dab82894eee9b77c81f9bc89cca
    - path: output/rtgtools/test_results/tp.vcf.gz.tbi
      md5sum: 45d8f8793140944f129e728299918c88
    - path: output/rtgtools/test_results/vcfeval.log
    - path: output/rtgtools/test_results/weighted_roc.tsv.gz
      md5sum: 5b8efc9e9381f604880412800f58e4e9
    - path: output/rtgtools/versions.yml
      md5sum: 55568e4bbe5ab7e634a1f392abb89cc4