- name: stranger test_stranger
  command: nextflow run tests/modules/stranger -entry test_stranger -c tests/config/nextflow.config
  tags:
    - stranger
  files:
    - path: output/expansionhunter/test.vcf
      md5sum: cfd4a1d35c0e469b99eb6aaa6d22de76
    - path: output/expansionhunter/versions.yml
      md5sum: f3962a6eecfddf9682414c0f605a885a
    - path: output/stranger/test.vcf.gz
      md5sum: 68b0ca1319851134ffa8793a4704dc11
    - path: output/stranger/versions.yml
      md5sum: 5ec35fd835fb1be50bc3e7c004310fc0

- name: stranger test_stranger_without_optional_variant_catalog
  command: nextflow run tests/modules/stranger -entry test_stranger_without_optional_variant_catalog -c tests/config/nextflow.config
  tags:
    - stranger
  files:
    - path: output/expansionhunter/test.vcf
      md5sum: cfd4a1d35c0e469b99eb6aaa6d22de76
    - path: output/expansionhunter/versions.yml
      md5sum: c95af9e6d8cd9bd2ce1090ca4e7a6020
    - path: output/stranger/test.vcf.gz
      md5sum: bbe15159195681d5c18596d3ad85c78f
    - path: output/stranger/versions.yml
      md5sum: 8558542a007e90ea5dcdceed3f12585d

- name: stranger test_stranger_without_optional_variant_catalog_stubs
  command: nextflow run tests/modules/stranger -entry test_stranger_without_optional_variant_catalog -c tests/config/nextflow.config -stub-run
  tags:
    - stranger
  files:
    - path: output/expansionhunter/test.vcf
    - path: output/expansionhunter/versions.yml
    - path: output/stranger/test.vcf.gz
    - path: output/stranger/versions.yml