name: last_lastal description: Find suitable score parameters for sequence alignment keywords: - LAST - align - fastq - fasta tools: - last: description: LAST finds & aligns related regions of sequences. homepage: https://gitlab.com/mcfrith/last documentation: https://gitlab.com/mcfrith/last/-/blob/main/doc/last-train.rst tool_dev_url: https://gitlab.com/mcfrith/last doi: "" licence: ['GPL v3-or-later'] input: - index: type: directory description: Directory containing the files of the LAST index pattern: "lastdb/" - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - fastx: type: file description: FASTA/FASTQ file pattern: "*.{fasta,fastq}" - param_file: type: file description: Trained parameter file pattern: "*.par" output: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - version: type: file description: File containing software version pattern: "versions.yml" - maf: type: file description: Gzipped MAF (Multiple Alignment Format) file pattern: "*.{maf.gz}" authors: - "@charles-plessy"