- name: pbccs test_pbccs
  command: nextflow run tests/modules/pbccs -entry test_pbccs -c tests/config/nextflow.config
  tags:
    - pbccs
  files:
    - path: output/pbccs/alz.chunk2.bam
      md5sum: d1a0266d5df64b74409a21981071a1c6
    - path: output/pbccs/alz.chunk2.bam.pbi
      md5sum: 582a4500ddcb3f4a24a443192620d039
    - path: output/pbccs/alz.metrics.json.gz
      contains: [ 'zmws' ]
    - path: output/pbccs/alz.report.json
      contains: [ 'Created by pbcopper' ]
    - path: output/pbccs/alz.report.txt
      md5sum: bbc5bd7a1269345cf7a7f3d4c746024b