- name: bwamem2 mem single-end
  command: nextflow run ./tests/software/bwamem2/mem -entry test_bwamem2_mem_single_end -c tests/config/nextflow.config
  tags:
    - bwamem2
    - bwamem2_mem
    - bwamem2_mem_single_end
  files:
    - path: output/bwamem2/test.bam
      md5sum: b8fceee111b3e23372c95ed765ac4401

- name: bwamem2 mem paired-end
  command: nextflow run ./tests/software/bwamem2/mem -entry test_bwamem2_mem_paired_end -c tests/config/nextflow.config
  tags:
    - bwamem2
    - bwamem2_mem
    - bwamem2_mem_paired_end
  files:
    - path: output/bwamem2/test.bam
      md5sum: 4b05c7e1b28e0835c647e890854897e4