- name: Run bwameth single-end test workflow
  command: nextflow run ./tests/software/bwameth/align -entry test_bwameth_align_single_end -c tests/config/nextflow.config
  tags:
    - bwameth
    - bwameth_align
  files:
    - path: output/test_single_end/test.bam
      md5sum: 48dde56f7b74de3a3e0b1914c45150de

- name: Run bwameth paired-end test workflow
  command: nextflow run ./tests/software/bwameth/align -entry test_bwameth_align_paired_end -c tests/config/nextflow.config
  tags:
    - bwameth
    - bwameth_align
  files:
    - path: output/test_paired_end/test.bam
      md5sum: b473343b32b7cfc677bfad1ab0e6bb5a