name: peddy description: Manipulation, validation and exploration of pedigrees keywords: - pedigrees - ped - family tools: - peddy: description: genotype, ped correspondence check, ancestry check, sex check. directly, quickly on VCF homepage: https://github.com/brentp/peddy documentation: https://peddy.readthedocs.io/en/latest/ tool_dev_url: https://github.com/brentp/peddy doi: "https://doi.org/10.1016/j.ajhg.2017.01.017" licence: ['MIT'] input: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - vcf: type: file description: VCF file pattern: "*.{vcf.gz}" - ped: type: file description: PED/FAM file pattern: "*.{ped,fam}" - vcf_tbi: type: file description: TBI file pattern: "*.{vcf.gz.tbi}" output: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - ped: type: file description: PED/FAM file pattern: "*.peddy.{ped}" - html: type: file description: HTML file pattern: "*.{html}" - csv: type: file description: CSV file pattern: "*.{csv}" - png: type: file description: PNG file pattern: "*.{png}" - versions: type: file description: File containing software versions pattern: "versions.yml" authors: - "@rannick"